<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE article PUBLIC "-//NLM//DTD Journal Publishing DTD v3.0 20080202//EN" "http://dtd.nlm.nih.gov/publishing/3.0/journalpublishing3.dtd">
<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="research-article" dtd-version="3.0" xml:lang="en">
<front>
<journal-meta>
<journal-id journal-id-type="publisher">ACPD</journal-id>
<journal-title-group>
<journal-title>Atmospheric Chemistry and Physics Discussions</journal-title>
<abbrev-journal-title abbrev-type="publisher">ACPD</abbrev-journal-title>
</journal-title-group>
<issn pub-type="epub">1680-7375</issn>
<publisher><publisher-name>Copernicus GmbH</publisher-name>
<publisher-loc>Göttingen, Germany</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.5194/acpd-9-10883-2009</article-id>
<title-group>
<article-title>What drives the observed variability of HCN in the troposphere and lower stratosphere?</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Li</surname>
<given-names>Q.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Palmer</surname>
<given-names>P. I.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Pumphrey</surname>
<given-names>H. C.</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Bernath</surname>
<given-names>P.</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author" xlink:type="simple"><name name-style="western"><surname>Mahieu</surname>
<given-names>E.</given-names>
</name>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
</contrib-group><aff id="aff1">
<label>1</label>
<addr-line>School of GeoSciences, The University of Edinburgh, Edinburgh, UK</addr-line>
</aff>
<aff id="aff2">
<label>2</label>
<addr-line>Department of Chemistry, University of York, York, UK</addr-line>
</aff>
<aff id="aff3">
<label>3</label>
<addr-line>Institute of Astrophysics and Geophysics, University of Liège, Liège, Belgium</addr-line>
</aff>
<pub-date pub-type="epub">
<day>04</day>
<month>05</month>
<year>2009</year>
</pub-date>
<volume>9</volume>
<issue>3</issue>
<fpage>10883</fpage>
<lpage>10912</lpage>
<permissions>
<license xlink:type="simple">
<license-p>This is an open-access article ditributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.atmos-chem-phys-discuss.net/9/10883/2009/acpd-9-10883-2009.html">This article is available from http://www.atmos-chem-phys-discuss.net/9/10883/2009/acpd-9-10883-2009.html</self-uri>
<self-uri xlink:href="http://www.atmos-chem-phys-discuss.net/9/10883/2009/acpd-9-10883-2009.pdf">The full text article is available as a PDF file from http://www.atmos-chem-phys-discuss.net/9/10883/2009/acpd-9-10883-2009.pdf</self-uri>
<abstract>
<p>We use the GEOS-Chem global 3-D chemistry transport model to investigate the
relative importance of chemical and physical processes that determine
observed variability of hydrogen cyanide (HCN) in the troposphere and lower
stratosphere. Consequently, we reconcile ground-based FTIR column
measurements of HCN, which show annual and semi-annual variations, with
recent space-borne measurements of HCN mixing ratio in the tropical lower
stratosphere, which show a large two-year variation. We find that the
observed column variability over the ground-based stations is determined by
a superposition of HCN from several regional burning sources, with GEOS-Chem
reproducing these column data with a positive bias of 5%. GEOS-Chem
reproduces the observed tropical HCN variability from the Microwave Limb
Sounder and the Atmospheric Chemistry Experiment satellite instruments with
a negative bias of 7%. We show the tropical biomass burning emissions
explain mostly the observed HCN variations in the upper troposphere and
lower stratosphere (UTLS), with the remainder due to atmospheric transport
and HCN chemistry. In the mid and upper stratosphere, atmospheric dynamics
progressively exerts more influences on HCN variations. The extent of
temporal overlap between African and other continental burning seasons is
key in establishing the apparent bienniel cycle in the UTLS. Similar
analysis of other, shorter-lived trace gases have not observed the
transition between annual and bienniel cycles in the UTLS probably because
the signal of inter-annual variations from surface emission has vanished
before arriving at the lower stratosphere (LS), due to shorter atmospheric
lifetimes.</p>
</abstract>
<counts><page-count count="30"/></counts>
</article-meta>
</front>
<body/>
<back>
<ref-list>
<title>References</title>
<ref id="ref1">
<label>1</label><mixed-citation publication-type="other" xlink:type="simple"> Baldwin, M. P., Gray, L. J., Dunkerton, T. J., et al.: The quasi-biennial oscillation, Rev. Geophys., 39, 179–229, 2001. </mixed-citation>
</ref>
<ref id="ref2">
<label>2</label><mixed-citation publication-type="other" xlink:type="simple"> Bange, H. W. and Williams, J.: Acetonitrile in atmospheric and biogeochemical cycles, Atmos. Environ., 34, 4959–4990, 2000. </mixed-citation>
</ref>
<ref id="ref3">
<label>3</label><mixed-citation publication-type="other" xlink:type="simple"> Bernath, P. F., McElroy, C. T., Abrams, M. C., et al.: Atmospheric Chemistry Experiment (ACE): Mission overview, Geophys. Res. Lett., 32, L15S01, doi:10.1029/2005GL022386, 2005. </mixed-citation>
</ref>
<ref id="ref4">
<label>4</label><mixed-citation publication-type="other" xlink:type="simple"> Bertschi, I., Yokelson, R. J., Ward, D. E., Babbitt, R. E., Susott, R. A., Goode, J. G., and Hao, W. M.: Trace gas and particle emissions from fires in large diameter and belowground biomass fuels, J. Geophys. Res., 108(D13), 8472, doi:10.1029/2002JD002100, 2003. </mixed-citation>
</ref>
<ref id="ref5">
<label>5</label><mixed-citation publication-type="other" xlink:type="simple"> Bey, I., Jacob, D. J., Yantosca, R. M., Logan, J. A., Field ,B. D., Fiore, A. M., Li, Q., Liu, H. Y., Mickley, L. J., and Schultz, M. G.: Global modeling of tropospheric chemistry with assimilated meteorology: Model description and evaluation, J. Geophys. Res., 106(D19), 23073–23095, 2001. </mixed-citation>
</ref>
<ref id="ref6">
<label>6</label><mixed-citation publication-type="other" xlink:type="simple"> Boone, C. D., Nassar, R., Walker, K. A., Rochon, Y., McLeod, S. D., Rinsland, C. P., and Bernath, P. F.: Retrievals for the atmospheric chemistry experiment Fourier-transform spectrometer, Appl. Optics, 44, 7218–7231, 2005. </mixed-citation>
</ref>
<ref id="ref7">
<label>7</label><mixed-citation publication-type="other" xlink:type="simple"> Brasseur, G., Zellner, R., De Rudder, A., and Arjis, E.: Is hydrogen cyanide a progenitor of acetonitrile in the atmosphere?, Geophys. Res. Lett., 12, 117–120, 1985. </mixed-citation>
</ref>
<ref id="ref8">
<label>8</label><mixed-citation publication-type="other" xlink:type="simple"> Cicerone, R. J. and Zellner, R.: The Atmospheric Chemistry of Hydrogen Cyanide (HCN), J. Geophys. Res., 88(C15), 10689–10696, 1983. </mixed-citation>
</ref>
<ref id="ref9">
<label>9</label><mixed-citation publication-type="other" xlink:type="simple"> Holton, J. R., Haynes, P. H., McIntyre, M. E., Douglass, A. R., Rood, R. B., and Pfister, L.: Stratosphere-Troposphere Exchange, Rev. Geophys., 33(4), 403–439, 1995. </mixed-citation>
</ref>
<ref id="ref10">
<label>10</label><mixed-citation publication-type="other" xlink:type="simple"> Holzinger, R., Warneke, C., Hansel, A., Jordan, A., and Lindinger, W.: Biomass burning as a source of formaldehyde, acetaldehyde, methanol, acetone, acetonitrile, and hydrogen cyanide, Geophys. Res. Lett., 26(8), 1161–1164, 1999. </mixed-citation>
</ref>
<ref id="ref11">
<label>11</label><mixed-citation publication-type="other" xlink:type="simple"> Holzinger, R., Jordan, A., Hansel, A., and Lindinger, W.: Automobile emissions of acetonitrile: Assessments of its contribution to the global sources, Atmos. Environ., 38, 187–193, 2001. </mixed-citation>
</ref>
<ref id="ref12">
<label>12</label><mixed-citation publication-type="other" xlink:type="simple"> Jacob, D. J., Crawford, J., Kleb, M. M., Connors, V. S., Bendura, R. J., Raper, J. L., Sachse, G. W., Gille, J., Emmons, L., and Heald, J. C.: Transport and Chemical Evolution over the Pacific (TRACE-P) mission: Design, execution, and first results, J. Geophys., Res., 108(D20), 9000, doi:10.1029/2002JD003276, 2003. </mixed-citation>
</ref>
<ref id="ref13">
<label>13</label><mixed-citation publication-type="other" xlink:type="simple"> Kleinboehl, A., Toon, G. C., Sen, B., et al.: On the stratospheric chemistry of hydrogen cyanide. Geophys. Res. Lett., 33, L11806, doi:10.1029/2006GL026015, 2006. </mixed-citation>
</ref>
<ref id="ref14">
<label>14</label><mixed-citation publication-type="other" xlink:type="simple"> Li, Q., Jacob, D. J., Bey, I., Yantosca, R. M., Zhao, Y., Kondo, Y., and Notholt, J.: Atmospheric hydrogen cyanide (HCN): Biomass burning source, ocean sink?, Geophys. Res. Lett., 27(3), 357–360, 2000. </mixed-citation>
</ref>
<ref id="ref15">
<label>15</label><mixed-citation publication-type="other" xlink:type="simple"> Li, Q., Jacob, D. J., Yantosca, R. M., Heald,C. L., Singh, H. B., Koike, M., Zhao, Y., Sachse, G. W., and Streets, D. G.: A global three-dimensional model analysis of the atmospheric budgets of HCN and CH&lt;sub&gt;3&lt;/sub&gt;CN: Constraints from aircraft and ground measurements, J. Geophys. Res., 108(D21), 8827, doi:10.1029/2002JD003975, 2003. </mixed-citation>
</ref>
<ref id="ref16">
<label>16</label><mixed-citation publication-type="other" xlink:type="simple"> Liu, C. and Zipser, E. J.: Global distribution of convection penetrating the tropical tropopause, J. Geophys. Res., 110, D23104, doi:10.1029/2005JD006063, 2005. </mixed-citation>
</ref>
<ref id="ref17">
<label>17</label><mixed-citation publication-type="other" xlink:type="simple"> Lobert, J. M., Scharffe, D. H., Hao, W. M., and Crutzen, P. J.: Importance of biomass burning in the atmospheric budgets of nitrogen-containing gases, Nature, 346, 552–554, 1990. </mixed-citation>
</ref>
<ref id="ref18">
<label>18</label><mixed-citation publication-type="other" xlink:type="simple"> Logan, J. A., Jones, D. B. A., Megretskaia, I. A., et al.: Quasibiennial oscillation in tropical ozone as revealed by ozonesonde and satellite data, J. Geophy. Res., 108(D8), 4244, doi:1029/2002JD002170, 2003. </mixed-citation>
</ref>
<ref id="ref19">
<label>19</label><mixed-citation publication-type="other" xlink:type="simple"> Lupu, A., Kaminski, J. W., Neary, L., McConnell, J. C., Toyota, K., Rinsland, C. P., Bernath, P. F., Walker, K. A., Boone, C. D., Nagahama, Y., and Suzuki, K.: Hydrogen cyanide in the upper troposphere: GEM-AQ simulation and comparison with ACE-FTS observations, Atmos. Chem. Phys. Discuss., 9, 2165–2194, 2009. </mixed-citation>
</ref>
<ref id="ref20">
<label>20</label><mixed-citation publication-type="other" xlink:type="simple"> Mahieu, E., Rinsland, C. P., Zander, R., Demoulin, P., Delbouille, L., and Roland, G.: Vertical Column Abundances of HCN Deduced from Ground-Based Infrared Solar Spectra: Long-Term Trend and Variability, J. Atmos. Chem., 20, 299–310, 1995. </mixed-citation>
</ref>
<ref id="ref21">
<label>21</label><mixed-citation publication-type="other" xlink:type="simple"> Mahieu, E., Zander, R., Delbouille, L., Demoulin, P., Roland, G., and Servais, C.: Observed trends in total vertical column abundances of atmospheric gases from IR solar spectra recorded at the Jungfraujoch, J. Atmos. Chem., 28, 227–243, 1997. </mixed-citation>
</ref>
<ref id="ref22">
<label>22</label><mixed-citation publication-type="other" xlink:type="simple"> Martin, R. V., Jacob, D. J., Logan, J. A., et al.: Interpretation of TOMS observations of tropical tropospheric ozone with a global model and in situ observations, J. Geosphys. Res., 107(D18), 4351, doi:10.1029/2001JD001480, 2002. </mixed-citation>
</ref>
<ref id="ref23">
<label>23</label><mixed-citation publication-type="other" xlink:type="simple"> Mote, P. W., Rosenlof, K. H., McIntyre, M. E., Carr, E. S., Gille, J. C., Holton ,J. R., Kinnersley,J. S., Pumphrey, H. C., Russell, J. M., and Waters, J. W.: An atmospheric tape recorder: The imprint of tropical tropopause temperatures on stratospheric water vapor, J. Geophys. Res, 101, NO(D2), 3989–4006, 1996. </mixed-citation>
</ref>
<ref id="ref24">
<label>24</label><mixed-citation publication-type="other" xlink:type="simple"> Park, R. J., Jacob, D. J., Field, B. D., Yantosca, R. M., and Chin, M.: Natural and transboundary pollution influences on sulface-nitrate-ammonium aerosols in the United States: Implications for policy, J. Geophys. Res., 109, D15204, doi:10.1029/2003JD004473, 2005. </mixed-citation>
</ref>
<ref id="ref25">
<label>25</label><mixed-citation publication-type="other" xlink:type="simple"> Plumb, R. A. and R. C. Bell: A model of the quasi-biennial oscillation on an equatorial beta-plane, Q. J. Roy. Meteorol. Soc., 108, 335–352, 1982. </mixed-citation>
</ref>
<ref id="ref26">
<label>26</label><mixed-citation publication-type="other" xlink:type="simple"> Pumphrey, H. C., Jimenez, C. J., and Waters, J. W.: Measurement of HCN in the middle atmosphere by EOS MLS, Geophys. Res. Lett., 33(8), L08804, doi:10.1029/2005GL025656, 2006. </mixed-citation>
</ref>
<ref id="ref27">
<label>27</label><mixed-citation publication-type="other" xlink:type="simple"> Pumphrey, H. C., Boone, C., Walker, K. A., Bernath, P., and Liversey, N. J.: Tropical tape recorder observed in HCN, Geophys. Res. Lett., 35, L05801, doi:10.1029/2007/GL032137, 2008. </mixed-citation>
</ref>
<ref id="ref28">
<label>28</label><mixed-citation publication-type="other" xlink:type="simple"> Randel, W. and Wu, F.: Isolation of the ozone QBO in SAGE II data by singular-value decomposition, J. Atmos. Sci., 53, 2546–2559, 1996. </mixed-citation>
</ref>
<ref id="ref29">
<label>29</label><mixed-citation publication-type="other" xlink:type="simple"> Randel, W. J., Wu, F., Russell III, J. M., Roche, A., and Waters, J. W.: Seasonal Cycle and QBO Variations in Stratospheric CH&lt;sub&gt;4&lt;/sub&gt; and H&lt;sub&gt;2&lt;/sub&gt;O Observed in UARS HALOE Data, J. Atmos. Sci., 55, 163–185, 1998. </mixed-citation>
</ref>
<ref id="ref30">
<label>30</label><mixed-citation publication-type="other" xlink:type="simple"> Randel, W. J. and Wu, F.: A stratospheric ozone profile data set for 1979–2005: Variability, trends, and comparison with column ozone data, J. Geosphys. Res., 112, D06313, doi:10.1029/2006JD007339, 2007. </mixed-citation>
</ref>
<ref id="ref31">
<label>31</label><mixed-citation publication-type="other" xlink:type="simple"> Rinsland, C. P., Goldman, A., Murcray, F. J., Stephen, T. M., Pougatchev, N. S., Fishman, J., David, S. J., Blatherwick,R. D., Novelli, P. C., Jones, N. B., and Connor, B. J.: Infrared solar spectroscopic measurements of free tropospheric CO, C&lt;sub&gt;2&lt;/sub&gt;H$_6$, and HCN above Mauna Loa, Hawaii: Seasonal variations and evidence for enhanced emissions from the Southeast Asian tropical fires 1997–1998, J. Geophys. Res., 104(D15), 18667–18680, 1999. </mixed-citation>
</ref>
<ref id="ref32">
<label>32</label><mixed-citation publication-type="other" xlink:type="simple"> Rinsland, C. P., Mahieu, E., Zander, R., Demoulin, P., Forrer, J., and Buchmann, B.: Free tropospheric CO, C&lt;sub&gt;2&lt;/sub&gt;H$_6$, and HCN above central Europe: Recent measurements from the Jungfraujoch station including the detection of elevated columns during 1998, J. Geophys. Res., 105(D19), 24235–24249, 2000. </mixed-citation>
</ref>
<ref id="ref33">
<label>33</label><mixed-citation publication-type="other" xlink:type="simple"> Rinsland, C. R., Goldman, A., Zander, R., and Mahieu, E.: Enhanced tropospheric HCN columns above Kitt Peak during the 1982–1983 and 1997–1998 El Nino warm phases, J. Quant. Spectrosc. Ra., 69, 3–8, 2001. </mixed-citation>
</ref>
<ref id="ref34">
<label>34</label><mixed-citation publication-type="other" xlink:type="simple"> Rinsland, C. P., Goldman, A., Hannigan, J. W., Wood, S. W., Chiou, L. S., and Mahieu, E.: Long-term trends of tropospheric carbon monoxide and hydrogen cyanide from analysis of high resolution infrared solar spectra, J. Quant. Spectrosc. Ra., 104, 40–51, 2007. </mixed-citation>
</ref>
<ref id="ref35">
<label>35</label><mixed-citation publication-type="other" xlink:type="simple"> Schneider, J., Burger, V., and Arnold, F.: Methyl cyanide and hydrogen cyanide measurements in the lower stratosphere: Implications for methyl cyanide sources and sinks, J. Geophys. Res., 102(D21), 25501–25506, 1997. </mixed-citation>
</ref>
<ref id="ref36">
<label>36</label><mixed-citation publication-type="other" xlink:type="simple"> Schoeberl, M. R., Roche, A. E., Russell III, J. M., Ortland, D., Hays, P. B., and Waters, J. W.: An estimation of the dynamical isolation of the tropical lower stratosphere using trace gas observations of the quasi-biennial oscillation, Geophys. Res. Lett., 24, 53–56, 1997. </mixed-citation>
</ref>
<ref id="ref37">
<label>37</label><mixed-citation publication-type="other" xlink:type="simple"> Schoeberl, M. R., Duncan, B. N., Douglass, A. R., Waters,J., Liversey, N., Read, W., and Filipiak, M.: The carbon monoxide tape recorder, Geophys. Res. Lett., 33, L12811, doi:10.1029/2006GL026178, 2006. </mixed-citation>
</ref>
<ref id="ref38">
<label>38</label><mixed-citation publication-type="other" xlink:type="simple"> Schoeberl, M. R., Douglass, A. R., Newman, P. A., Lait, L. R., Lary, D., Waters, J., Liversey, N., Froidevaux, L., Lambert, A., Read, W., Filipiak, M. J., and Pumphrey, H. C.: QBO and annual cycle variations in tropical lower stratosphere trace gases from HALOE and Aura MLS observations, J. Geophys. Res., 113, D05301, doi:10.1029/2007JD008678, 2008. </mixed-citation>
</ref>
<ref id="ref39">
<label>39</label><mixed-citation publication-type="other" xlink:type="simple"> Singh, H. B., Salas, L., Herlth, D., Kolyer, R., Czech, E., Viezee, W., Li, Q., Jacob, D. J., Blake, D., Sachse, G., Harward, C. N., Fuelberg, H., Kiley, C. M., Zhao,Y., and Kondo, Y.: In situ measurements of HCN and CH&lt;sub&gt;3&lt;/sub&gt;CN over the Pacific Ocean: Sources, sinks and budgets, J. Geophys. Res., 108, 8795, doi:10.1029/2002JD003006, 2003. </mixed-citation>
</ref>
<ref id="ref40">
<label>40</label><mixed-citation publication-type="other" xlink:type="simple"> Streets, D. G., Bond, T. C., Carmichael, G. R., Fernandes, S. D., Fu,Q., He, D., Klimont, Z., Nelson, S. M., Tsai, N. Y., Wang, M. Q., Woo, J.-H., and Yarber, K. F.: An inventory of gaseous and primary aerosol emissions in Asia in the year 2000, J. Geophys. Res., 108(D21), 8809, doi:10.1029/2002JD003093, 2003. </mixed-citation>
</ref>
<ref id="ref41">
<label>41</label><mixed-citation publication-type="other" xlink:type="simple"> van der Werf, G. R., Randerson, J. T., Giglio, L., Collatz, G. J., Kasibhatla, P. S., and Arellano Jr., A. F.: Interannual variability in global biomass burning emissions from 1997 to 2004, Atmos. Chem. Phys., 6, 3423–3441, 2006. </mixed-citation>
</ref>
<ref id="ref42">
<label>42</label><mixed-citation publication-type="other" xlink:type="simple"> Wand, M. P. and Jones, M. C.: Kernel Smoothing, Chapman and Hall, London, UK, 1995. </mixed-citation>
</ref>
<ref id="ref43">
<label>43</label><mixed-citation publication-type="other" xlink:type="simple"> Waters, J. W.: The Earth Observing System Microwave Limb Sounder (EOS MLS) on the Aura satellite. IEEE T. Geosci. Remote, 44(5), 1106–1121, 2006. </mixed-citation>
</ref>
<ref id="ref44">
<label>44</label><mixed-citation publication-type="other" xlink:type="simple"> Zhao, Y., Kondo, Y., Murcray, F. J., et al.: Seasonal variations of HCN over northern Japan measured by ground-based infrared solar spectroscopy, Geophys. Res. Lett., 27, 2085–2088, 2000. </mixed-citation>
</ref>
<ref id="ref45">
<label>45</label><mixed-citation publication-type="other" xlink:type="simple"> Zhao, Y., Strong, K., Kondo, Y., et al.: Spectroscopic measurements of tropospheric CO, C&lt;sub&gt;2&lt;/sub&gt;H$_6$, C&lt;sub&gt;2&lt;/sub&gt;H&lt;sub&gt;2&lt;/sub&gt;, and HCN in northern Japan, J. Geophys. Res., 107(D8), 4343, doi:10.1029/2001JD000748, 2002. </mixed-citation>
</ref>
</ref-list>
</back>
</article>