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<article language="en">
	<journal>
		<journal_title>Atmospheric Chemistry and Physics Discussions</journal_title>
		<journal_url>www.atmos-chem-phys-discuss.net</journal_url>
		<issn>1680-7367</issn>
		<eissn>1680-7375</eissn>
		<volume_number>9</volume_number>
		<issue_number>3</issue_number>
		<publication_year>2009</publication_year>
	</journal>
	<doi>10.5194/acpd-9-10829-2009</doi>
	<article_url>http://www.atmos-chem-phys-discuss.net/9/10829/2009/</article_url>
	<abstract_html>http://www.atmos-chem-phys-discuss.net/9/10829/2009/acpd-9-10829-2009.html</abstract_html>
	<fulltext_pdf>http://www.atmos-chem-phys-discuss.net/9/10829/2009/acpd-9-10829-2009.pdf</fulltext_pdf>
	<start_page>10829</start_page>
	<end_page>10881</end_page>
	<publication_date>2009-05-04</publication_date>
	<article_title content_type="html">Bacteria in the global atmosphere – Part 2: Modelling of emissions and transport between different ecosystems</article_title>
	<authors>
		<author numeration="1" affiliations="1">
			<name>S. M. Burrows</name>
			<email>susannah.burrows@mpic.de</email>
		</author>
		<author numeration="2" affiliations="1">
			<name>T. Butler</name>
		</author>
		<author numeration="3" affiliations="1">
			<name>P. Jöckel</name>
		</author>
		<author numeration="4" affiliations="1">
			<name>H. Tost</name>
		</author>
		<author numeration="5" affiliations="1">
			<name>A. Kerkweg</name>
		</author>
		<author numeration="6" affiliations="1">
			<name>U. Pöschl</name>
		</author>
		<author numeration="7" affiliations="1">
			<name>M. G. Lawrence</name>
		</author>
	</authors>
	<affiliations>
		<affiliation numeration="1" content_type="html">Max Planck Institute for Chemistry, Mainz, Germany</affiliation>
	</affiliations>
	<abstract content_type="html">Bacteria are constantly being transported through the atmosphere,
  which may have implications for human health, agriculture, cloud
  formation, and the dispersal of bacterial species.  We simulated the
  global transport of bacterial cells, represented as 1&amp;mu;m diameter
  spherical solid particle tracers, in a chemistry-climate model.  We
  investigated the factors influencing residence time and distribution
  of the particles, including emission region, CCN activity
  and removal by ice-phase precipitation.  The global
  distribution depends strongly on the assumptions made about uptake
  into cloud droplets and ice.  The transport is also affected, to a
  lesser extent, by the emission region and by season.  We examine the
  potential for exchange of bacteria between ecosystems and obtain
  rough estimates of the flux from each ecosystem by using an optimal
  estimation technique, together with a new compilation of available
  observations described in a companion paper.  Globally, we estimate
  the total emissions of bacteria to the atmosphere to be
  1400 Gg per year with an upper bound of 4600 Gg per year,
  originating mainly from grasslands, shrubs and crops.  In order to
  improve understanding of this topic, more measurements of the
  bacterial content of the air will be necessary. Future measurements
  in wetlands, sandy deserts, tundra, remote glacial and coastal
  regions and over oceans will be of particular interest.</abstract>
	<references>
		<reference numeration="1" content_type="text"> Amato, P., Demeer, F., Melaouhi, A., Fontanella, S., Martin-Biesse, A.-S., Sancelme, M., Laj, P., and Delort, A.-M.: A fate for organic acids, formaldehyde and methanol in cloud water: their biotransformation by micro-organisms, Atmos. Chem. Phys., 7, 4159–4169, 2007. </reference>
		<reference numeration="2" content_type="text"> Andronache, C.: Estimated variability of below-cloud aerosol removal by rainfall for observed aerosol size distributions, Atmos. Chem. Phys., 3, 131–143, 2003. </reference>
		<reference numeration="3" content_type="text"> Andronache, C.: Estimates of sulfate aerosol wet scavenging coefficient for locations in the Eastern United States, Atmos. Environ., 38, 795–804, 2004. </reference>
		<reference numeration="4" content_type="text"> Ariya, P.: Microbiological degradation of atmospheric organic compounds, Geophys. Res. Lett., 29, p 34, doi:10.1029/2002GL015637, 2002. </reference>
		<reference numeration="5" content_type="text"> Bauer, H., Kasper-Giebl, A., Löflund, M., Giebl, H., Hitzenberger, R., Zibuschka, F., and Puxbaum, H.: The contribution of bacteria and fungal spores to the organic carbon content of cloud water, precipitation and aerosols, Atmos. Res., 64, 109–119, \doi10.1016/S0169-8095(02)00084-4, 2002. </reference>
		<reference numeration="6" content_type="text"> Bauer, H., Giebl, H., Hitzenberger, R., Kasper-Giebl, A., Reischl, G., Zibuschka, F., and Puxbaum, H.: Airborne bacteria as cloud condensation nuclei, J. Geophys. Res., 108, 4658, doi:10.1029/2003JD003545, 2003. </reference>
		<reference numeration="7" content_type="text"> Burrows, S M., Elbert, W., Lawrence, M., and Pöschl, U.: Bacteria in the global atmosphere – Part~1: Review and synthesis of literature data for different ecosystems, Atmos. Chem. Phys. Discuss., 9, 10777–10827, 2009. </reference>
		<reference numeration="8" content_type="text"> Byrd, R., Lu, P., Nocedal, J., and Zhu, C.: A limited memory algorithm for bound constrained optimization, SIAM J. Sci. Stat. Comp., 16, 1190–1208, 1995. </reference>
		<reference numeration="9" content_type="text"> Diehl, K., Simmel, M., and Wurzler, S.: Numerical sensitivity studies on the impact of aerosol properties and drop freezing modes on the glaciation, microphysics, and dynamics of clouds, J. Geophys. Res., 111, 7202, doi:10.1029/2005JD005884, 2006. </reference>
		<reference numeration="10" content_type="text"> Dimmick, R., Wolochow, H., and Chatigny, M.: Evidence for more than one division of bacteria within airborne particles, Appl. Environ. Microb., 38, 642–643, 1979. </reference>
		<reference numeration="11" content_type="text"> Elbert, W., Taylor, P. E., Andreae, M. O., and Pöschl, U.: Contribution of fungi to primary biogenic aerosols in the atmosphere: wet and dry discharged spores, carbohydrates, and inorganic ions, Atmos. Chem. Phys., 7, 4569–4588, 2007. </reference>
		<reference numeration="12" content_type="text"> Enting, I.: Inverse Methods in Global Biogeochemical Cycles, chap. Green&apos;s function methods of tracer inversion, American Geophysical Union, 2000. </reference>
		<reference numeration="13" content_type="text"> Franc, G. and DeMott, P.: Cloud Activation Characteristics of Airborne Erwinia carotovora Cells, J. Appl. Meteorol., 37, 1293–1300, 1998. </reference>
		<reference numeration="14" content_type="text"> Gallagher, M., Nemitz, E., Dorsey, J., Fowler, D., Sutton, M., Flynn, M., and Duyzer, J.: Measurements and parameterizations of small aerosol deposition velocities to grassland, arable crops, and forest: Influence of surface roughness length on deposition, J. Geophys. Res., 107(D12), 4154, doi:10.1029/2001JD000817, 2002. </reference>
		<reference numeration="15" content_type="text"> Gay, D.: Usage summary for selected optimization routines, Computing Science Technical Report, AT&amp;T Bell Laboratories, 1990. </reference>
		<reference numeration="16" content_type="text"> Gregory, P.: The microbiology of the atmosphere, Leonard Hill, USA, 1973. </reference>
		<reference numeration="17" content_type="text"> Griffin, D., Garrison, V., Herman, J., and Shinn, E.: African desert dust in the Caribbean atmosphere: Microbiology and public health, Aerobiologia, 17, 203–213, 2001a. </reference>
		<reference numeration="18" content_type="text"> Griffin, D., Kellogg, C., and Shinn, E.: Dust in the Wind: Long Range Transport of Dust in the Atmosphere and Its Implications for Global Public and Ecosystem Health, Global Change &amp; Human Health, 2, 20–33, 2001b. </reference>
		<reference numeration="19" content_type="text"> Griffin, D., Westphal, D., and Gray, M.: Airborne microorganisms in the African desert dust corridor over the mid-Atlantic ridge, Ocean Drilling Program, Leg 209, Aerobiologia, 22, 211–226, 2006. </reference>
		<reference numeration="20" content_type="text"> Harrison, R., Jones, A., Biggins, P., Pomeroy, N., Cox, C., Kidd, S., Hobman, J., Brown, N., and Beswick, A.: Climate factors influencing bacterial count in background air samples, Int. J. Biometeorol., 49, 167–178, 2005. </reference>
		<reference numeration="21" content_type="text"> Henning, S., Bojinski, S., Diehl, K., Ghan, S., Nyeki, S., Weingartner, E., Wurzler, S., and Baltensperger, U.: Aerosol partitioning in natural mixed-phase clouds, Geophys. Res. Lett., 31, L06101, doi:10.1029/2003GL019025, 2004. </reference>
		<reference numeration="22" content_type="text"> Herlihy, L., Galloway, J., and Mills, A.: Bacterial utilization of formic and acetic acid in rainwater, Atmos. Environ., 21, 2397–2402, 1987. </reference>
		<reference numeration="23" content_type="text"> Hicks, B., Baldocchi, D., Meyers, T., Hosker, R., and Matt, D.: A preliminary multiple resistance routine for deriving dry deposition velocities from measured quantities, Water Air Soil Pollut., 36, 311–330, 1987. </reference>
		<reference numeration="24" content_type="text"> Hinds, W C.: Aerosol technology: Properties, behavior, and measurement of airborne particles, Wiley-Interscience, New York, USA,~442~pp., 1982. </reference>
		<reference numeration="25" content_type="text"> Hummelshøj, P., Jensen, N., and Larson, S.: Precipitation scavenging and atmosphere-surface exchange, chap. Particle dry deposition to a sea surface, Hemisphere Publishing Corporation, Washington, USA, 1992. </reference>
		<reference numeration="26" content_type="text"> Jaenicke, R.: Abundance of Cellular Material and Proteins in the Atmosphere, Science, 308, p 73, \doi10.1126/science.1106335, 2005. </reference>
		<reference numeration="27" content_type="text"> Jöckel, P.: Technical note: Recursive rediscretisation of geo-scientific data in the Modular Earth Submodel System (MESSy), Atmos. Chem. Phys., 6, 3557–3562, 2006. </reference>
		<reference numeration="28" content_type="text"> Jöckel, P., Sander, R., Kerkweg, A., Tost, H., and Lelieveld, J.: Technical Note: The Modular Earth Submodel System (MESSy) - a new approach towards Earth System Modeling, Atmos. Chem. Phys., 5, 433–444, 2005. </reference>
		<reference numeration="29" content_type="text"> Jöckel, P., Tost, H., Pozzer, A., Brühl, C., Buchholz, J., Ganzeveld, L., Hoor, P., Kerkweg, A., Lawrence, M. G., Sander, R., Steil, B., Stiller, G., Tanarhte, M., Taraborrelli, D., van Aardenne, J., and Lelieveld, J.: The atmospheric chemistry general circulation model ECHAM5/MESSy1: consistent simulation of ozone from the surface to the mesosphere, Atmos. Chem. Phys., 6, 5067–5104, 2006. </reference>
		<reference numeration="30" content_type="text"> Jöckel, P., Kerkweg, A., Buchholz-Dietsch, J., Tost, H., Sander, R., and Pozzer, A.: Technical Note: Coupling of chemical processes with the Modular Earth Submodel System (MESSy) submodel TRACER, Atmos. Chem. Phys., 8, 1677–1687, 2008. </reference>
		<reference numeration="31" content_type="text"> Jones, A M. and Harrison, R M.: The effects of meteorological factors on atmospheric bioaerosol concentrations – a review, Sci. Total Environ., 326, 151–180, 2004. </reference>
		<reference numeration="32" content_type="text"> Kasibhatla, P., Heimann, M., Rayner, P., Mahowald, N., Prinn, R., and Hartley, D.(eds.): Inverse Methods in Global Biogeochemical Cycles, American Geophysical Union, 2000. </reference>
		<reference numeration="33" content_type="text"> Kerkweg, A., Buchholz, J., Ganzeveld, L., Pozzer, A., Tost, H., and Jöckel, P.: Technical Note: An implementation of the dry removal processes DRY DEPosition and SEDImentation in the Modular Earth Submodel System (MESSy), Atmos. Chem. Phys., 6, 4617–4632, 2006a. </reference>
		<reference numeration="34" content_type="text"> Kerkweg, A., Sander, R., Tost, H., and Jöckel, P.: MESSy Emissions Users Manual, Air Chemistry Department, Max-Planck Institute of Chemistry, PO Box 3060, 55020 Mainz, Germany, online available: akerkweg@mpch-mainz.mpg.de, 2006b. </reference>
		<reference numeration="35" content_type="text"> Kerkweg, A., Sander, R., Tost, H., and Jöckel, P.: Technical note: Implementation of prescribed (OFFLEM), calculated (ONLEM), and pseudo-emissions (TNUDGE) of chemical species in the Modular Earth Submodel System (MESSy), Atmos. Chem. Phys., 6, 3603–3609, 2006c. </reference>
		<reference numeration="36" content_type="text"> Lighthart, B. and Shaffer, B T.: Bacterial flux from chaparral into the atmosphere in mid-summer at a high desert location, Atmos. Environ., 28, 1267–1274, 1994. </reference>
		<reference numeration="37" content_type="text"> Lin, S. and Rood, R.: Multidimensional Flux-Form Semi-Lagrangian Transport Schemes, Monthly Weather Review, 124, 2046–2070, 1996. </reference>
		<reference numeration="38" content_type="text"> Lohmann, U. and Roeckner, E.: Design and performance of a new cloud microphysics scheme developed for the ECHAM general circulation model, Clim. Dynam., 12, 557–572, 1996. </reference>
		<reference numeration="39" content_type="text"> Martinsson, B., Frank, G., Cederfelt, S., Swietlicki, E., Berg, O., Zhou, J., Bower, K., Bradbury, C., Birmili, W., Stratmann, F., et~al.: Droplet nucleation and growth in orographic clouds in relation to the aerosol population, Atmos. Res., 50, 289–315, 1999. </reference>
		<reference numeration="40" content_type="text"> Móhler, O., DeMott, P. J., Vali, G., and Levin, Z.: Microbiology and atmospheric processes: the role of biological particles in cloud physics, Biogeosciences, 4, 1059–1071, 2007. </reference>
		<reference numeration="41" content_type="text"> Morris, C., Georgakopoulos, D., and Sands, D.: Ice nucleation active bacteria and their potential role in precipitation, J. Phys. IV France, 121, 87–103, 2005. </reference>
		<reference numeration="42" content_type="text"> Nordeng, T E.: Extended versions of the convective parameterization scheme at ECMWF and their impact on the mean and transient activity of the model in the tropics., Tech. Rep. Technical Memorandum 206, ECMWF, Reading, UK, 1994. </reference>
		<reference numeration="43" content_type="text"> Olson, J.: World ecosystems (WE1. 4): Digital raster data on a 10 minute geographic 1080 (2160 grid square), Global Ecosystem Database, Version, 1, 1992. </reference>
		<reference numeration="44" content_type="text"> Prescott, L., Harley, J., and Klein, D.: Microbiology, Wm. C. Brown Publishers, Dubuque, IA, USA, third edn., 37–41, 1996. </reference>
		<reference numeration="45" content_type="text"> R Development Core Team: R: A Language and Environment for Statistical Computing, version 2.7.2, R Foundation for Statistical Computing, Vienna, Austria, online available at: http://www.R-project.org, ISBN 3-900051-07-0, 2008. </reference>
		<reference numeration="46" content_type="text"> Roeckner, E., Bauml, G., Bonaventura, L., Brokopf, R., Esch, M., Giorgetta, M., Hagemann, S., Kirchner, I., Kornblue, L., Manzini, E., et~al.: The atmospheric general circulation model ECHAM5. Part 1: Model description, Tech. Rep. 349, Max Planck Institute for Meteorology, Hamburg, Germany, 2003. </reference>
		<reference numeration="47" content_type="text"> Roedel, W.: Physik unserer Umwelt, Die Atmosphäre, Berlin Heidelberg, Germany, 1992. </reference>
		<reference numeration="48" content_type="text"> Sands, D., Langhans, V., Scharen, A., and Desmet, G.: The association between bacteria and rain and possible resultant meteorological implications, Idojaras (Budapest), 86, 148–152, 1992. </reference>
		<reference numeration="49" content_type="text"> Sattler, B., Puxbaum, H., and Psenner, R.: Bacterial growth in supercooled cloud droplets, Geophys. Res. Lett., 28, 239–242, \doi10.1029/2000GL011684, 2001. </reference>
		<reference numeration="50" content_type="text"> Schnell, R. and Vali, G.: World-wide source of leaf-derived freezing nuclei, Nature, 246, 212–213, 1973. </reference>
		<reference numeration="51" content_type="text"> Schnell, R. and Vali, G.: Biogenic Ice Nuclei: Part I. Terrestrial and Marine Sources, J. Atmos. Sci., 33, 1554–1564, 1976. </reference>
		<reference numeration="52" content_type="text"> Schulz, H. and Jorgensen, B.: Big Bacteria, Annu. Rev. Microbiol., 55, 105–137, 2001. </reference>
		<reference numeration="53" content_type="text"> Schulz, M., Balkanski, Y J., Guelle, W., and Dulac, F.: Role of aerosol size distribution and source location in a three-dimensional simulation of a Saharan dust episode tested against satellite-derived optical thickness, J. Geophys. Res., 103, 10579–10592, \doi10.1029/97JD02779, 1998. </reference>
		<reference numeration="54" content_type="text"> Shaffer, B T. and Lighthart, B.: Survey of Culturable Airborne Bacteria at Four Diverse Locations in Oregon: Urban, Rural, Forest, and Coastal, Microb. Ecol., 34, 167–177, 1997. </reference>
		<reference numeration="55" content_type="text"> Slinn, S. and Slinn, W.: Predictions for Particle Deposition on Natural Waters, Atmos. Environ., 14, 1013–1016, doi:10.1016/0004-6981(80)90032-3, 1980. </reference>
		<reference numeration="56" content_type="text"> Slinn, W.: Predictions for particle deposition to vegetative canopies, Atmos. Environ., 16(7), 1785–1794, doi:10.1016/0004-6981(82)90271-2, 1982. </reference>
		<reference numeration="57" content_type="text"> Slinn, W.: Precipitation Scavenging, Dry Deposition and Resuspension, chap. chap. 11, Precipitation Scavenging, United States Dept. of Energy, 1983. </reference>
		<reference numeration="58" content_type="text"> Slinn, W. G N.: Atmosphere-surface exchange of particulate and gaseous pollutants, chap. Dry deposition and resuspension of aerosol particles – a new look at some old problems, US DOE Tech. Info. Center, Oak Ridge, TN, USA, 1976. </reference>
		<reference numeration="59" content_type="text"> Stier, P., Feichter, J., Kinne, S., Kloster, S., Vignati, E., Wilson, J., Ganzeveld, L., Tegen, I., Werner, M., Balkanski, Y., Schulz, M., Boucher, O., Minikin, A., and Petzold, A.: The aerosol-climate model ECHAM5-HAM, Atmos. Chem. Phys., 5, 1125–1156, 2005. </reference>
		<reference numeration="60" content_type="text"> Sun, J. and Ariya, P A.: Atmospheric organic and bio-aerosols as cloud condensation nuclei (CCN): A review, Atmos. Environ., 40, 795–820, \doi10.1016/j.atmosenv.2005.05.052, 2006. </reference>
		<reference numeration="61" content_type="text"> Svenningsson, B., Hansson, H., Martinsson, B., Wiedensohler, A., Swietlicki, E., Cederfelt, S., Wendisch, M., Bower, K., Choularton, T., and Colvile, R.: Cloud droplet nucleation scavenging in relation to the size and hygroscopic behaviour of aerosol particles, Atmos. Environ., 31, 2463–2475, 1997. </reference>
		<reference numeration="62" content_type="text"> Tiedtke, M.: A Comprehensive Mass Flux Scheme for Cumulus Parameterization in Large-Scale Models, Mon. Weather Rev., 117, 1779–1800, \doi10.1175/1520-0493(1989)117&lt;1779:ACMFSF&gt;2.0.CO;2, 1989. </reference>
		<reference numeration="63" content_type="text"> Tilley, R., Eamus, D., and Ho, J.: Background Bioaerosols and Aerosols at Two Sites in Northern Australia: Preliminary Measurements, Tech. rep., DSTO Aeronautical and Maritime Research Laboratory, Victoria, Australia, 2001. </reference>
		<reference numeration="64" content_type="text"> Tompkins, A.: A prognostic parameterization for the subgrid-scale variability of water vapor and clouds in large-scale models and its use to diagnose cloud cover., J. Atmos. Sci., 59, 1917–1942, 2002. </reference>
		<reference numeration="65" content_type="text"> Tong, Y. and Lighthart, B.: Diurnal Distribution of Total and Culturable Atmospheric Bacteria at a Rural Site, Aerosol Sci. Tech., 30, 246–254, 1999. </reference>
		<reference numeration="66" content_type="text"> Tost, H.: Global Modelling of Cloud, Convection and Precipitation Influences on Trace Gases and Aerosols, Ph.D. thesis, Rheinische Friedrich-Wilhelms-Universitat Bonn, Germany, online available at: http://hss.ulb.uni-bonn.de/diss_online, 2006. </reference>
		<reference numeration="67" content_type="text"> Tost, H., Jöckel, P., Kerkweg, A., Sander, R., and Lelieveld, J.: Technical note: A new comprehensive SCAVenging submodel for global atmospheric chemistry modelling, Atmos. Chem. Phys., 6, 565–574, 2006. </reference>
		<reference numeration="68" content_type="text"> Wolfenbarger, D O.: Dispersion of Small Organisms. Distance Dispersion Rates of Bacteria, Spores, Seeds, Pollen, and Insects; Incidence Rates of Diseases and Injuries, Am. Midl. Nat., 35, 1–152, 1946. </reference>
	</references>
</article>

